Genomic sequencing produces a large amount of data and the data analysis consists of multiple steps. To ensure that data is processed in a consistent manner H3ABioNet and others have compiled several trusted tools and workflows. Due to the large amount of data needing to be processed, access to extensive data storage and high-performance computing resources may be required. Many of these tools are open source and only run on Linux. Combining these tools into robust pipelines can be complicated and may require the assistance of a bioinformatician. Consult the bioinformatician section to get help.
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H3ABioNet has developed a number of tools and services for H3Africa and the broader bioinformatics community.
The European Bioinformatics Institute (EMBL-EBI) maintains the world’s most comprehensive range of freely available and up-to-date molecular data resources.
Essential scientific and technical information about software tools, databases and services for bioinformatics and the life sciences.
Broad Institute of MIT and Harvard, collection of genomics tools.