Genomic Sequence Databases

Joint Genome Institute

Genomes of microbes, fungi algae and plants

The Cancer Genome Atlas

Database of human cancer genomes used to explore spectrum of the genomic changes.

ENCODE

Encyclopedia of DNA Elements. A comprehensive parts list of functional elements in the human genome.

Ensembl

Ensembl is a genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation.

RefSeq

NCBI Reference Sequence Database:
"A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein."

H-Invitational Database

Annotated Human Gene Database of human genes and transcripts, including splice variants, ncRNA's

NCBI Genomes

NCBI's databases of genome sequences, maps, chromosomes, assemblies and annotations

1000 Genomes

The 1000 Genomes Project ran between 2008 and 2015, creating the largest public catalogue of human variation and genotype data.

International Cancer Genome Consortium

Database of human cancer genomes used to unravel the genomic changes in many forms of cancer

GWAS central

Genetics association study summary level findings gathered from public domain projects

NCBI dbVar

NCBI's database of human genomic structural variation

GA4GH

Global Alliance for Genomics and Health

 

Protein Sequence Database

 

Panorama Public

Panorama is a freely-available, open-source repository server application for targeted mass spectrometry assays that integrates into a Skyline mass spec workflow.

Peptide Atlas

PeptideAtlas is a multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments.

Joint Genome Institute

Genomes of microbes, fungi algae and plants

Ensembl

Ensembl is a genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation.

iProX

"iProX is an integrated proteome resources center in China, which is built to accelerate the worldwide data sharing in proteomics. iProX is composed of a data submission system and a proteome database. The submission system is established under the guidance of the data-sharing policy made by ProteomeXchange consortium."

ProteomeXchange

The ProteomeXchange Consortium was established to provide globally coordinated standard data submission and dissemination pipelines involving the main proteomics repositories, and to encourage open data policies in the field

RefSeq

NCBI Reference Sequence Database:
"A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein."

PRIDE

JPOST

A proteomic database named jPOST (Japan ProteOme STandard Repository/Database) to integrate proteome datasets generated from multiple projects and institutions.

MassIVE

MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data. MassIVE datasets can be assigned ProteomeXchange accessions to satisfy publication requirements.

Uniprot

Uniprot proteomes contains protein sequences from organisms that have had their genomes sequences. Some of these protein sequences may be manually curated while other automatically annotated.

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